diff --git a/editor/scene/3d/node_3d_editor_plugin.cpp b/editor/scene/3d/node_3d_editor_plugin.cpp
index d1df94acd25..aac34bd6912 100644
--- a/editor/scene/3d/node_3d_editor_plugin.cpp
+++ b/editor/scene/3d/node_3d_editor_plugin.cpp
@@ -2183,23 +2183,26 @@ void Node3DEditorViewport::_sinput(const Ref<InputEvent> &p_event) {
 		}
 	}
 
-	ViewportNavMouseButton orbit_mouse_preference = (ViewportNavMouseButton)EDITOR_GET("editors/3d/navigation/orbit_mouse_button").operator int();
-	ViewportNavMouseButton pan_mouse_preference = (ViewportNavMouseButton)EDITOR_GET("editors/3d/navigation/pan_mouse_button").operator int();
-	ViewportNavMouseButton zoom_mouse_preference = (ViewportNavMouseButton)EDITOR_GET("editors/3d/navigation/zoom_mouse_button").operator int();
-	bool orbit_mod_pressed = _is_nav_modifier_pressed("spatial_editor/viewport_orbit_modifier_1") && _is_nav_modifier_pressed("spatial_editor/viewport_orbit_modifier_2");
-	bool pan_mod_pressed = _is_nav_modifier_pressed("spatial_editor/viewport_pan_modifier_1") && _is_nav_modifier_pressed("spatial_editor/viewport_pan_modifier_2");
-	bool zoom_mod_pressed = _is_nav_modifier_pressed("spatial_editor/viewport_zoom_modifier_1") && _is_nav_modifier_pressed("spatial_editor/viewport_zoom_modifier_2");
-	int orbit_mod_input_count = _get_shortcut_input_count("spatial_editor/viewport_orbit_modifier_1") + _get_shortcut_input_count("spatial_editor/viewport_orbit_modifier_2");
-	int pan_mod_input_count = _get_shortcut_input_count("spatial_editor/viewport_pan_modifier_1") + _get_shortcut_input_count("spatial_editor/viewport_pan_modifier_2");
-	int zoom_mod_input_count = _get_shortcut_input_count("spatial_editor/viewport_zoom_modifier_1") + _get_shortcut_input_count("spatial_editor/viewport_zoom_modifier_2");
-	bool orbit_not_empty = !_is_shortcut_empty("spatial_editor/viewport_orbit_modifier_1") || !_is_shortcut_empty("spatial_editor/viewport_orbit_modifier_2");
-	bool pan_not_empty = !_is_shortcut_empty("spatial_editor/viewport_pan_modifier_1") || !_is_shortcut_empty("spatial_editor/viewport_pan_modifier_2");
-	bool zoom_not_empty = !_is_shortcut_empty("spatial_editor/viewport_zoom_modifier_1") || !_is_shortcut_empty("spatial_editor/viewport_zoom_modifier_2");
 	Vector<ShortcutCheckSet> shortcut_check_sets;
-	shortcut_check_sets.push_back(ShortcutCheckSet(orbit_mod_pressed, orbit_not_empty, orbit_mod_input_count, orbit_mouse_preference, NAVIGATION_ORBIT));
-	shortcut_check_sets.push_back(ShortcutCheckSet(pan_mod_pressed, pan_not_empty, pan_mod_input_count, pan_mouse_preference, NAVIGATION_PAN));
-	shortcut_check_sets.push_back(ShortcutCheckSet(zoom_mod_pressed, zoom_not_empty, zoom_mod_input_count, zoom_mouse_preference, NAVIGATION_ZOOM));
-	shortcut_check_sets.sort_custom<ShortcutCheckSetComparator>();
+
+	if (Input::get_singleton()->get_mouse_mode() != Input::MOUSE_MODE_CAPTURED) {
+		ViewportNavMouseButton orbit_mouse_preference = (ViewportNavMouseButton)EDITOR_GET("editors/3d/navigation/orbit_mouse_button").operator int();
+		ViewportNavMouseButton pan_mouse_preference = (ViewportNavMouseButton)EDITOR_GET("editors/3d/navigation/pan_mouse_button").operator int();
+		ViewportNavMouseButton zoom_mouse_preference = (ViewportNavMouseButton)EDITOR_GET("editors/3d/navigation/zoom_mouse_button").operator int();
+		bool orbit_mod_pressed = _is_nav_modifier_pressed("spatial_editor/viewport_orbit_modifier_1") && _is_nav_modifier_pressed("spatial_editor/viewport_orbit_modifier_2");
+		bool pan_mod_pressed = _is_nav_modifier_pressed("spatial_editor/viewport_pan_modifier_1") && _is_nav_modifier_pressed("spatial_editor/viewport_pan_modifier_2");
+		bool zoom_mod_pressed = _is_nav_modifier_pressed("spatial_editor/viewport_zoom_modifier_1") && _is_nav_modifier_pressed("spatial_editor/viewport_zoom_modifier_2");
+		int orbit_mod_input_count = _get_shortcut_input_count("spatial_editor/viewport_orbit_modifier_1") + _get_shortcut_input_count("spatial_editor/viewport_orbit_modifier_2");
+		int pan_mod_input_count = _get_shortcut_input_count("spatial_editor/viewport_pan_modifier_1") + _get_shortcut_input_count("spatial_editor/viewport_pan_modifier_2");
+		int zoom_mod_input_count = _get_shortcut_input_count("spatial_editor/viewport_zoom_modifier_1") + _get_shortcut_input_count("spatial_editor/viewport_zoom_modifier_2");
+		bool orbit_not_empty = !_is_shortcut_empty("spatial_editor/viewport_orbit_modifier_1") || !_is_shortcut_empty("spatial_editor/viewport_orbit_modifier_2");
+		bool pan_not_empty = !_is_shortcut_empty("spatial_editor/viewport_pan_modifier_1") || !_is_shortcut_empty("spatial_editor/viewport_pan_modifier_2");
+		bool zoom_not_empty = !_is_shortcut_empty("spatial_editor/viewport_zoom_modifier_1") || !_is_shortcut_empty("spatial_editor/viewport_zoom_modifier_2");
+		shortcut_check_sets.push_back(ShortcutCheckSet(orbit_mod_pressed, orbit_not_empty, orbit_mod_input_count, orbit_mouse_preference, NAVIGATION_ORBIT));
+		shortcut_check_sets.push_back(ShortcutCheckSet(pan_mod_pressed, pan_not_empty, pan_mod_input_count, pan_mouse_preference, NAVIGATION_PAN));
+		shortcut_check_sets.push_back(ShortcutCheckSet(zoom_mod_pressed, zoom_not_empty, zoom_mod_input_count, zoom_mouse_preference, NAVIGATION_ZOOM));
+		shortcut_check_sets.sort_custom<ShortcutCheckSetComparator>();
+	}
 
 	Ref<InputEventMouseMotion> m = p_event;